Screening for atypical porcine pestivirus in Swedish boar semen used for artificial insemination and a characterisation of the seminal RNA microbiome including the virome

Table 1 Sequencing and assembly metrics for all 8 datasets

Pool id	Number of reads before QC	Read length before QC	Number of good quality reads	Read length good quality reads	% Host mapped	Total nr of contigs	Viral reads	Viral contigs	Bacterial reads	Bacterial contigs
Pool 1	17.3 M	151bp, 151bp	15.7 M	133bp, 133bp	20,85%	5280	16,021	7	3.2 M	1628
Pool 2	8.7 M	151bp, 151bp	7.2 M	125bp, 125bp	39.55%	5013	10,776	6	0.96 M	769
Pool 3	6.6 M	151bp, 151bp	6.1 M	122bp, 122bp	47,09%	7976	3890	4	0.63 M	883
Pool 4	4.8 M	151bp, 151bp	4.4 M	135bp, 135bp	13,98%	3216	6048	10	1 M	1349
Pool 5	6.2 M	151bp, 151bp	5.6 M	132bp, 132bp	20,59%	2810	6419	10	1.1 M	758
Pool 6	14.6 M	151bp, 151bp	13.4 M	131bp, 131bp	12,83%	5252	15,707	5	3 M	1418
Pool 7	13.6 M	151bp, 151bp	12.7 M	128bp, 128bp	14,04%	4050	12,622	4	2.9 M	2229
Pool 8	7.0 M	151bp, 151bp	6.8 M	130bp, 130bp	24,43%	4621	4550	5	1.2 M	1042

ISSN: 1746-6148