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Table 4 Composition of the PCR mixture and temperature profile for the bacterial gene 16S rRNA amplification

From: Insight into the intestinal microbiome of farrowing sows following the administration of garlic (Allium sativum) extract and probiotic bacteria cultures under farming conditions

Real Time 2x-PCR Mix SYBR A

10 μl

Starter 1055F 10 μM 5′-ATGGCTGTCGTCAGCT-3’

0.4 μl

Starter 1392R 10 μM 5′-ACGGGCGGTGTGTAC-3’

0.4 μl

DNA template

1 μl

deionized water

8.2 μl

initial denaturation

95 °C, 3 min.

denaturation

95 °C, 15 s

priming

58 °C, 30 s

elongation

72 °C, 30s

appointment of the melting curve (measurement of the fluorescence in each temperature)

65 °C - > 95 °C

  1. Abbreviations: PCR Polymerase chain reaction, PCR Mix SYBR A – ready-to-use mixture to the real-time PCR with fluorophore (A&A Biotechnology, Poland); F = forward primer; R = reverse primer