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Table 1 Categorization of detection results on porcine diarrhea associated viruses of samples collected from 2012 to 2018

From: Prevalence and phylogenetic analysis of porcine diarrhea associated viruses in southern China from 2012 to 2018

Classifications

Sample No.

Viruses (Number (positive rate, %))

PEDV

PDCoV

TGEV

PoRV

SADS

-CoV

Year

 2012

158

91 (57.59)

31 (19.62)

1 (0.63)

0 (0.00)

0 (0)

 2013

301

187 (62.13)

81 (26.91)

1 (0.33)

3 (1.00)

0 (0)

 2014

714

413 (57.84)

193 (27.03)

4 (0.56)

5 (0.70)

0 (0)

 2015

574

343 (59.76)

161 (28.05)

8 (1.39)

9 (1.57)

0 (0)

 2016

476

239 (50.21)

124 (26.05)

2 (0.42)

3 (0.63)

0 (0)

 2017

389

218 (56.04)

105 (26.99)

1 (0.26)

3 (0.77)

7 (1.80)

 2018

375

221 (58.93)

118 (31.47)

4 (1.07)

2 (0.53)

0 (0)

 Total

2, 987

1, 712 (57.32)

813 (27.22)

21 (0.70)

25 (0.84)

7 (0.23)

Province

 Jiangxi

2, 690

1, 524 (56.65)

737 (27.40)

16 (0.59)

23 (0.86)

0 (0)

 Zhejiang

81

50 (61.73)

22 (27.16)

1 (1.23)

1 (1.23)

0 (0)

 Fujian

68

45 (66.18)

23 (33.82)

1 (1.47)

0 (0)

7 (10.29)

 Guangdong

92

58 (63.04)

18 (19.57)

2 (2.17)

1 (1.09)

0 (0)

 Hunan

56

35 (62.50)

13 (23.21)

1 (1.79)

0 (0)

0 (0)

Sample type

 Intestine

1, 581

1, 001 (63.31)

469 (29.66)

13 (0.82)

13 (0.82)

5 (0.32)

 Feces

1, 305

688 (52.72)

336 (25.75)

8 (0.61)

12 (0.92)

2 (0.15)

 Milk

101

23 (22.73)

8 (7.92)

0 (0)

0 (0)

0 (0)

Growing stage

 Sow

673

355 (52.75)

187 (27.79)

7 (1.04)

2 (0.30)

1 (0.15)

 Suckling piglet

1, 697

1, 064 (62.70)

501 (29.52)

12 (0.70)

18 (1.05)

6 (0.35)

 Nursery pig

357

181 (50.70)

73 (20.45)

1 (0.28)

3 (0.84)

0 (0)

 Finishing pig

215

91 (42.33)

36 (16.74)

1 (0.47)

2 (0.93)

0 (0)

  1. Abbreviations: PEDV Porcine epidemic diarrhea virus, PDCoV Porcine deltacoronavirus, TGEV Transmissible gastroenteritis virus, PoRV Porcine rotavirus, SADS-CoV Swine acute diarrhea syndrome coronavirus