Table 3 Sequence analyses of the 27 C. suis MLST alleles and concatenated sequences
From: Asymptomatic infections with highly polymorphic Chlamydia suis are ubiquitous in pigs
Allele | Total number of polymorphisms (Δnt) | No. of non-synonymous substitutions | No. of synonymous substitutions | dN/dS ratio | Number of haplotypes |
|---|---|---|---|---|---|
gatA (425 bp) | 12 | 1 | 11 | 0.010 | 11 |
oppA_3 (468 bp) | 17 | 3 | 14 | 0.061 | 12 |
hflX (435 bp) | 24 | 2 | 22 | 0.022 | 18 |
gidA (474 bp) | 29 | 4 | 25 | 0.074 | 18 |
enoA (381 bp) | 23 | 1 | 22 | 0.007 | 23 |
hemN (432 bp) | 17 | 2 | 15 | 0.113 | 14 |
fumC (465 bp) | 14 | 2 | 12 | 0.024 | 14 |
Concatenated (3080 bp) | 136 | 15 | 121 | - | 26 |