Table 2 The number of variants identified for each cat, including SNPs and Indels. Variants are divided by annotation categories
From: The practical use of genome sequencing data in the management of a feline colony pedigree
| Â | Total | Non-synonymous | Frameshift | Splice site | Stop gain/loss |
|---|---|---|---|---|---|
Cat I | |||||
 all | 13,791,282 | 28,984 | 2394 | 656 | 650 |
 homozygous | 4,722,225 | 8502 | 1106 | 237 | 179 |
 unique | 1,947,067 | 4256 | 290 | 104 | 110 |
Cat II | |||||
 all | 13,663,921 | 28,961 | 2414 | 636 | 627 |
 homozygous | 4,808,547 | 8605 | 1115 | 255 | 170 |
 unique | 1,142,035 | 2399 | 244 | 70 | 58 |
Cat III | |||||
 all | 13,635,215 | 28,467 | 2380 | 632 | 622 |
 homozygous | 4,882,667 | 8869 | 1115 | 230 | 189 |
 unique | 1,708,602 | 3399 | 317 | 92 | 79 |
Shared | |||||
 all | 9,196,149 | 19,377 | 1730 | 434 | 407 |
 homozygous | 2,597,948 | 4947 | 898 | 131 | 108 |