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Table 3 Genetic variants within sub-genotypes of G. duodenalis assemblage E at the tpi, bg and gdh gene in lambs

From: Prevalence and genetic characterization of Cryptosporidium species and Giardia duodenalis in lambs in Oromia Special Zone, Central Ethiopia

Genetic variants

GenBank accession no

No. of isolates

Nucleotide at positions

36

50

57

78

131

144

200

254

512

tpi gene

 E (Ref.)

JF792419

 

G

A

C

C

C

A

A

A

G

 E1

KT922261

4

*

*

*

*

*

*

*

*

*

 E2

KT922262

2

A

*

T

*

*

G

*

*

*

 E3

KT922260

1

*

*

T

T

*

*

*

*

*

bg gene

 E (Ref.)

EU189361

 

G

C

G

A

G

T

A

A

G

 E4

KT922250

1

*

*

*

*

*

*

*

*

*

 ET-L2

KT922251

2

*

*

*

*

*

*

*

G

*

gdh gene

 E (Ref.)

KR048474

 

G

C

G

T

G

G

G

C

T

 ET-L3

KT922256

1

*

*

*

*

*

*

A

*

*

 ET-L4

KU196418

1

*

T

*

*

A

*

*

*

C

  1. Key: Asterisks (*) represent nucleotide identity
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BMC Veterinary Research

ISSN: 1746-6148

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