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Table 2 Primers used for quantitative PCR analysis

From: Influence of dietary protein and fructooligosaccharides on fecal fermentative end-products, fecal bacterial populations and apparent total tract digestibility in dogs

Target species

Primer

Sequence (5′-3′)

Reference

Total bacteria

FP 16S

GGTAGTCYAYGCMSTAAACG

[53]

RP 16S

GACARCCATGCASCACCTG

 

Escherichia coli

E. coli F

GTTAATACCTTTGCTCATTGA

[54]

E. coli R

ACCAGGGTATCTAATCC TGTT

 

Bifidobacterium genus

g-Bifid-F

CTCCTGGAAACGGGTGG

[55]

g-Bifid-R

GGTGTTCTTCCCGATATCTACA

 

Lactobacillus genus

Lab-0159

GGAAACAG(A/G)TGCTAATACCG

[56]

Univ-0515

ATCGTATTACCGCGGCTGCTGGCA

 

Enterococcus genus

EnteroF

CCCTTATTGTTAGTTGCCATCATT

[57]

EnteroR

ACTCGTTGTACTTCCCATTGT

 

Clostridium perfringens

CP1

AAAGATGGCATCATCATTCAAC

[58]

CP2

TACCGTCATTATCTTCCCCAAA

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