Target pathogen categories (target gene) | Oligonucleotides (sequence 5′-3′) | Reference for original method (modified protocol) |
---|---|---|
Anaplasma phagocytophilum (msp2) | ApMSP2f (ATG GAA GGT AGT GTT GGT TAT GGT ATT) ApMSP2r (TTG GTC TTG AAG CGC TCG TA) ApMSP2p (TGG TGC CAG GGT TGA GCT TGA GAT TG-HEX) | |
haemoplasmas (16S rRNA) | Sybr_For (AGC AAT RCC ATG TGA ACG ATG AA) Sybr_Rev1 (TGG CAC ATA GTT TGC TGT CAC TT) Sybr_Rev2 (GCT GGC ACA TAG TTA GCT GTC ACT) | |
Mycoplasma wenyonii, M. ovis (16S rRNA) | MwenyoniiF (CCA CGT GAA CGA TGA AGG TCT T) MwenyoniiR (GGC ACA TAG TTA GCT GTC ACT TAT TCA A) Mweny_P (FAM-AGT ACC ATC AAG GCG CGC TCA TTT CCT AG-TAMRA) | [38] |
‘Candidatus M. haemobos’ (16S rRNA) | Mwen_short.forw (CCA TGT GAA CGA TGA AGG TCT TT) Mwen_short.rev (AGT TTG CTG TCA CTT ATT CAT GAG GTA) Mwen_short.p (VIC-CTA TCA GTT RTT ATC CCT CAT AA-MGB) | [38] |
Mycoplasma suis (16S rRNA) | RTsuisF (CCC TGA TTG TAC TAA TTG AAT AAG) RTsuisR (GCG AAC ACT TGT TAA GCA AG) MGBsuis2 (FAM- TGR ATA CAC AYT TCA G -MGBNFQ) | [18] |
Rickettsia helvetica (23S rRNA) | Rickhelv.147f (TTT GAA GGA GAC ACG GAA CAC A) Rickhelv.211r (TCC GGT ACT CAA ATC CTC ACG TA) Rickhelv.170p (6FAM-AAC CGT AGC GTA CAC TTA-MGBNFQ) | [39] |
other rickettsiae (gltA) | CS-F (TCG CAA ATG TTC ACG GTA CTT T) CS-R (TCG TGC ATT TCT TTC CAT TGT G) CS-P (FAM-TGC AAT AGC AAG AAC CGT AGG CTG GAT G-BHQ) | [39] |