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Table 2 Summary of the complete PCV genomes sequenced used in this study

From: Genetic variation analysis of PCV1 strains isolated from Guangxi Province of China in 2015

Strain name

Accesion Number

Country

Collection Date

Genotype

Length(nt)

Source

Linical condition/tissue origin of isolation

BJ-1

FJ475129

Beijing, China

07/5/2009

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

PCV1

AY193712

Zhijiang, China

17/2/2003

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

PCV1-Hun

KJ408799

Hungary

16/4/2014

PCV1

1759bp

GenBank

lymph nodes, spleen, lung and other tissue materials

PCV1-Eng-1970

KJ408798

United Kingdom

16/4/2014

PCV1

1759bp

GenBank

lymph nodes, spleen, lung and other tissue materials

PCV1-XFD-Beijing

KC447455

Beijing, China

16/4/2013

PCV1

1759bp

GenBank

lymph nodes, spleen, lung and other tissue materials

PCV1/G

JN398656

Harbin, China

31/8/2011

PCV1

1759bp

GenBank

Contaminated PK-15 cell

HZ2006

EF533941

Hangzhou, China

01/5/2007

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

NMB

GU799575

USA

28/2/2011

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

Jiangsu

GU722334

Jiangsu, China

03/3/2010

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

Tian Jin

GU371908

Tianjin, China

06/2/2010

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

ZY

KF732857

Guiyang, China

08/1/2014

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

DY

KC924758

Guiyang, China

13/8/2013

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

GY

KC894933

Guiyang, China

06/8/2013

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

Guiyang

KC878437

Guiyang, China

30/7/2013

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

ZZ-3

KC733436

Zhengzhou, China

18/6/2013

PCV1

1759bp

GenBank

Lymph node

NJ03

JX566507

Nanjing, China

06/5/2013

PCV1

1759bp

GenBank

Congenital tremors/lymph nodes, spleen, lung and other tissue materials

CT-PCV-P7

AY099501

USA

19/5/2009

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

CCL33-UGent

JN133303

Belgium

12/11/2011

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

3384

JN133302

United Kingdom

12/11/2011

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

HRB-09

GQ449671

Beijing, China

24/10/2011

PCV1

1758bp

GenBank

PK-15 cell culture

PCV3_Rotarix_con1

HM143844

USA

20/6/2010

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

SC-10

DQ659154

Guangdong, China

19/6/2006

PCV1

1759bp

GenBank

Pig serum

SC-9

DQ659153

Guangdong, China

19/6/2006

PCV1

1759bp

GenBank

Pig serum

SC-8

DQ494788

Guangdong, China

06/5/2006

PCV1

1759bp

GenBank

Pig serum

SC-7

DQ494787

Guangdong, China

06/5/2006

PCV1

1759bp

GenBank

Pig serum

SC-5

DQ472016

Guangdong, China

24/4/2006

PCV1

1759bp

GenBank

Pig serum

SC-6

DQ472015

Guangdong, China

24/4/2006

PCV1

1759bp

GenBank

Pig serum

SC-4

DQ472014

Guangdong, China

24/4/2006

PCV1

1759bp

GenBank

Pig serum

SC-3

DQ472013

Guangdong, China

24/4/2006

PCV1

1759bp

GenBank

Pig serum

SC-2

DQ472012

Guangdong, China

24/4/2006

PCV1

1759bp

GenBank

Pig serum

NT70719

FJ159693

Jiangsu, China

23/9/2008

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

TZ70717

FJ159692

Jiangsu, China

23/9/2008

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

SD-73-3

KJ746930

Shandong, China

15/7/2014

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

TJ1307

KJ808815

Beijing, China

18/8/2014

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

SD-73-1

KJ746929

Shandong, China

15/7/2014

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

PK

DQ650650

Jiangsu, China

08/7/2006

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

Aust4

AY754015

Australia

21/3/2014

PCV1

1759bp

GenBank

PK-15 cell culture

Aust3

AY754014

Australia

21/3/2014

PCV1

1759bp

GenBank

PK-15 cell culture

SC-1

DQ358813

Guangdong, China

01/3/2006

PCV1

1759bp

GenBank

Pig serum

WB-H-8

DQ648032

Hungary

02/7/2006

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

YZ70719

FJ159691

Jiangsu, China

23/9/2008

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

YZ70722

FJ159689

Jiangsu, China

23/9/2008

PCV1

1759bp

GenBank

Lymph nodes, spleen, lung and other tissue materials

PCV2a

AF027217

Canada

19/3/2009

PCV2a

1768bp

GenBank

Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials

PCV2b

AF112862

Canada

12/10/2005

PCV2b

1768bp

GenBank

Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials

PCV2c

AF109398

Canada

23/7/2001

PCV2c

1768bp

GenBank

Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials

PCV2d-1(P2425NT)

JX099786

Viet Nam

01/5/2014

PCV2d-1

1767bp

GenBank

Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials

PCV2d-2(CS5)

KX161667

Hunan, China

05/6/2016

PCV2d-2

1767bp

GenBank

Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials

GXdx115

KX827778

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXdx105

KX827779

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXdx64

KX827780

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXdx51

KX827781

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXbb158

KX827782

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXyl225

KX827783

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXyl224

KX827784

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXlsh19

KX827785

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXlsh12

KX827786

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXlsh11

KX827787

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXlsh10

KX827788

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXlsh7

KX827789

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXlsh2

KX827790

Guangxi, China

00/7/2015

PCV1

1759bp

This study

Lungs, spleen, and lymph nodes

GXdx84

KY437725

Guangxi, China

00/7/2015

PCV1/2d

1757bp

This study

Lungs, spleen, and lymph nodes