Primer function | Putative function | Target gene | Primer sequence (5′–3′) | Amplicon size (bp) | Annealing temperature (°C) | Reference |
---|---|---|---|---|---|---|
Virulence genes | ||||||
S.uberis | ||||||
Adhesion molecue- | Adherence and invasion of mammary epithelial cells | sua | TCAACTTGACGAATCGCTTG TCAGCCATTGTTTCTGCTTG | 480 | 47 | [20] |
Plasminogen activator | colonization | pauA/skc | CGGGTTGAAGAACCTATCACTC TGGAAGTTGACCAAGAGAATTG | 255 | 50 | [20] |
Surfacedehydrogenase protein | colonization | gapC | GCTCCTGGTGGAGATGATGT GTCACCAGTGTAAGCGTGGA | 200 | 51 | [11] |
CAMP factor | Forms pores in host-cell membran | cfu | TATCCCGATTTGCAGCCTAC CCTGGTCAACTTGTGCAACTG | 205 | 50 | [11] |
Lactoferrin binding protein | Binding Lactoferrin | lbp | CGACCCTTCAGATTGGATTC TAGCAGCATCACGTTCTTCG | 698 | 50 | [11] |
Hyaluronic acid capsule | Resistance to phagocytosis | hasA | GAAAGGTCTGATGCTGATG TCATCCCCTATGCTTACAG | 319 | 44 | [33] |
hasB | TCTAGACGCCGATCAAGC TGAATTCCTATGCGTCGATC | 532 | 47 | [33] | ||
hasC | TGCTTGGTGACGATTTGATG GTCCAATGATAGCAAGGTCAC | 225 | 47 | [33] | ||
S.agalactiae | ||||||
Adherence and virulence protein A | Binding to immobilized fibronectin | pavA | TTCCCATGATTTCAACAACAAG AACCTTTTGACCATGAATTGGTA | 495 | 47 | [20] |
Streptococcal C5a peptidase- adhesion | Prevents neutropil, promotes adherence | scpB | AGTTGCTTCTTACAGCCCAGA GGCGCAGACATACTAGTTCCA | 567 | 51 | [20] |
Surface protein Rib- | Resistance to proteases | rib | CAGGAAGTGCTGTTACGTTAAAC CGTCCCATTTAGGGTCTTCC | 369 | 51 | [34] |
C beta protein | Binds to the immuno-globulin A | bac | CTATTTTTGATATTGACAATGCAA GTCGTTACTTCCTTGAGATGTAAC | 592 | 46 | [35] |
Β-haemolisin | Promotes invasion of host cells | cylE | TGACATTTACAAGTGACGAAG TTGCCAGGAGGAGAATAGGA | 248 | 47 | [36] |
C alfa protein | Adherence to epithelial cells | bca | TAACAGTTATGATACTTCACAGAC ACGACTTTCTTCCGTCCACTTAGG | 535 | 49 | [37] |
CAMP factor | Forms pores in host-cell membran | cfb | ATGGGATTTGGGATAACTAAGCTAG AGCGTGTATTCCAGATTTCCTTAT | 193 | 50 | [38] |
Lamining-binding protein | Promote adherence to host laminin | lmb | AGTCAGCAAACCCCAAACAG GCTTCCTCACCAGCTAAAACG | 397 | 50 | [39] |
S.dysgalactiae | ||||||
α-enolase | Plasminogen binding | eno | ATGTCAATTATTACTGATGT CTATTTTTTTAAGTTATAGA | 1308 | 36 | [17] |
Nephritis-associated plasminogen-binding receptor | Plasminogen binding | napr | GTTAAAGTTGGTATTAACGGT TTGAGCAGTGTAAGACATTTC | 963 | 45 | [17] |