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Table 2 Bacterial strains (n = 107), that were used as reference material

From: Mycoplasma detection by triplex real-time PCR in bronchoalveolar lavage fluid from bovine respiratory disease complex cases

Identification (number of isolates tested)

CCUG identificationc

Source

Acidovorax spp. (3)

NAc

CVI collectiona

Actinomyces

NA

CVI collectiona

Aerococcus viridans

NA

CVI collectionb

Bibersteinia trehalosi

Pasteurella trehalosi

CCUG 37711

Biberstenia trehalosi 20 AA III 3 E3

NA

CVI collectiona

Biberstenia trehalosi 21 AA III 3 E4

NA

CVI collectiona

Brucella abortus

NA

CVI collectionb

Comamonas kerstersii

NA

CVI collectiona

Corynebacterium bovis (2)

NA

CVI collectionb

Corynebacterium pseudotuberculosis

NA

CVI collectionb

Escherichia coli

NA

CVI collectionb

Gallibacterium anatis (5)

NA

CVI collectiona

Hafnia alvei

NA

CVI collectiona

Histophilus somni

NA

ATCC 22132e

Histophilus somni (4)

NA

CVI collectiona

Klebsiella oxytoca

NA

CVI collectionb

Klebsiella pneumoniae

NA

CVI collectionb

Lactobacillus mucosae

NA

CVI collectiona

Lactococcus garvieae

NA

CVI collectionb

Lactococcus lactis

NA

CVI collectionb

Listeria monocytogenes

NA

CVI collectionb

Mannheimia heamolytica

NA

ATCC 14003

Mannheimia heamolytica

NA

CVI collectiona

Mannheimia haemolytica

Mannheimia glucosida

CCUG 38457-T

Mannheimia granulomatis

Mannheimia granulomatis

CCUG 45422-T

Mannheimia granulomatis 25 AA III 3 E8

NA

CVI collectiona

Mannheimia haemolytica

Mannheimia ruminalis

CCUG 38470-T

Mannheimia haemolytica (5)

NA

CVI collectiona

Mannheimia haemolytica 3 AA III 2 H2

NA

CVI collectiona

Mannheimia varigena

Mannheimia varigena

CCUG 38462-T

Mannheimia varigena 19 AA III 3 E2

NA

CVI collectiona

Mannheimia varigena 24 AA III 3 E7

NA

CVI collectiona

Micrococcus luteus

NA

CVI collectionb

Moraxella bovis

NA

CVI collectionb

Moraxelle lacunata (2)

NA

CVI collectiona

Mycobacterium avium subsp. paratuberculosis

NA

CVI collectionb

Mycobacterium bovis

NA

CVI collectionb

Mycobacterium tuberculosis

NA

CVI collectionb

Neisseria zoodegmatis

NA

CVI collectiona

Pantoea agglomerans Erwina herbicola (n = 13)

NA

CVI collectiona

Pasteurella multocida

NA

ATCC 15743e

Pasteurella multocida

NA

CVI collectiona

Pasteurella multocida

Bisgaard Taxon 13

CCUG 16497d

Pasteurella multocida

Bisgaard Taxon 13

CCUG 16498d

Pasteurella multocida

Pasteurella multocida ss gallicida

CCUG 17978-Td

Pasteurella multocida

Pasteurella multocida ss septica

CCUG 17977-Td

Not typable

Pasteurella aerogenes

CCUG 27905d

Proteus mirabillis

NA

CVI collectiona

Pseudomonas aeruginosa

NA

CVI collectionb

Psychrobacter spp.

NA

CVI collectiona

Salmonella enteritica ssp. enteritica serovar Dublin

NA

CVI collectionb

Salmonella enteritica ssp. enteritica serovar Typhinurium

NA

CVI collectionb

Serratia marcescans

NA

CVI collectionb

Staphylococcus aureus

NA

CVI collectionb

Staphylococcus epidermidis

NA

CVI collectionb

Streptococcus agalactiae

NA

CVI collectionb

Streptococcus bovis (5)

NA

CVI collectiona

Streptococcus dysgalactiae

NA

CVI collectionb

Streptococcus faecalis

NA

CVI collectionb

Streptococcus hyointestinalis

NA

CVI collectiona

Streptococcus pluranimalium (5)

NA

CVI collectiona

Streptococcus pneumoniae

NA

CVI collectionb

Streptococcus spp. (3)

NA

CVI collectiona

Streptococcus uberis

NA

CVI collectionb

Trueperella pyogenes

NA

ATCC 9731e

Trueperella pyogenes (5)

NA

CVI collectiona

Yersinia enterolytica

NA

CVI collectionb

Yersinia pseudotuberculosis

Pasteurella lymphangitidis

CCUG 27188-Td

  1. aIsolated from lungs of calves
  2. bIsolated from other tissues of cattle as lungs
  3. cNot applicable
  4. dCCUG: Culture Collection University of Götenborg, Sweden
  5. eATCC: American Type Culture Collection, USA
  6. All bacterial strains, except the CCUG strains, were from an in-house strain collection