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Fig. 5 | BMC Veterinary Research

Fig. 5

From: Emergence of porcine epidemic diarrhea virus in southern Germany

Fig. 5

Phylogenetic tree of current German PEDV strains compared with strains from the United States and China. Full genome sequences of German PEDV strains were aligned using MAFFT, and phylogenetic analyses were carried out using the maximum-likelihood method PhyML [22] with a GTR substitution model and tree reconstruction supported by 1000 bootstrapping replicates. All tools implemented in Geneious (vs. 8.0.5, Biomatters [30]). Strain derived from farm A are found as BH76/14, from farm B as K14/14, and farm C as K16/14

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