Table 3 Evaluation of the discriminatory capacity of the combinations of MIRU-VNTR locus
From: Evaluation of MIRU-VNTR for typing of Mycobacterium bovis isolated from Sika deer in Northeast China
Locus combination | No. of clusters | No. of isolates in individual clusters | Hunter–Gaston discriminatory index (HGDI) |
|---|---|---|---|
ETRA, MIRU2, MIRU4, MIRU23, MIRU31, MIRU39, MIRU40, QUB11b, QUB26, Mtub4, Mtub21, Mtub30, Mtub34, MIRU16, MIRU27 | 12 | 1-17 | 0.897 |
ETRA, MIRU4, QUB11b, Mtub4 | 12 | 1-17 | 0.897 |
MIRU2, MIRU23, MIRU27, MIRU31, MIRU39, MIRU40, QUB26, Mtub21 | 12 | 1-17 | 0.897 |
MIRU2, MIRU4, MIRU16, MIRU23, MIRU27, MIRU31, MIRU39, MIRU40 | 11 | 1-17 | 0.893 |
MIRU2, MIRU23, MIRU27, MIRU31, MIRU39, MIRU40 | 10 | 1-17 | 0.877 |
ETRA, MIRU4, QUB11b, Mtub4 | 8 | 6-24 | 0.836 |