From: The ESR1 gene is associated with risk for canine mammary tumours
SNP | NCBI SNP ID | Minor allele | Frequency minor allele | Major allele | OR | P Raw a | P Bonf b | P Perm c | P BPerm d | |
---|---|---|---|---|---|---|---|---|---|---|
High risk breeds | Low risk breeds | |||||||||
CHEK2 INT 8-9 | ss244244336 | G | 0.269 | 0.040 | T | 8.8 | 8.6E-19 | 7.8E-18 | <1.0E-07 | 0.076 |
ESR1 EX 2 | rs21960513 | T | 0.629 | 0.305 | C | 3.9 | 5.0E-21 | 4.5E-20 | <1.0E-07 | 0.107 |
ERBB2 EX 14 | rs24537331 | A | 0.253 | 0.511 | G | 0.3 | 8.4E-15 | 7.6E-14 | <1.0E-07 | 0.110 |
BRCA2 INT 18-19 | ss244244323 | G | 0.000 | 0.133 | A | _ e | 1.8E-16 | 1.6E-15 | <1.0E-07 | 0.110 |
ERBB2 INT 3-4 | ss244244348 | G | 0.330 | 0.681 | A | 0.2 | 2.4E-24 | 2.2E-23 | <1.0E-07 | 0.112 |
BRCA2 EX 11 | rs23244160 | G | 0.174 | 0.346 | T | 0.4 | 8.4E-09 | 7.6E-08 | 4.2E-05 | 0.151 |
CHEK2 INT 5-6 | ss244244335 | G | 0.051 | 0.000 | A | _ e | 9.6E-06 | 8.6E-05 | 0.005 | 0.182 |
ESR1 EX 4 | ss244244343 | G | 0.061 | 0.394 | A | 0.1 | 9.8E-33 | 8.8E-32 | <1.0E-07 | 0.204 |
PTEN EX 9 | ss244244369 | T | 0.112 | 0.346 | C | 0.3 | 1.3E-16 | 1.2E-15 | <1.0E-07 | 0.209 |
BRCA2 EX 5 | rs23250374 | C | 0.429 | 0.23 | T | 2.5 | 1.1E-09 | 1.0E-08 | 1.0E-05 | 0.321 |
ERBB2 INT 12-13b | rs24537327 | A | 0.485 | 0.283 | G | 2.4 | 2.2E-09 | 1.9E-08 | 2.0E-05 | 0.362 |
ERBB2 EX 13b | rs24537329 | T | 0.486 | 0.285 | C | 2.4 | 2.4E-09 | 2.2E-08 | 2.1E-05 | 0.368 |
PTEN INT 7-8 | ss244244368 | A | 0.183 | 0.356 | G | 0.5 | 8.0E-09 | 7.2E-08 | 4.0E-05 | 0.385 |
BRCA2 5UTR | ss244244322 | T | 0.343 | 0.506 | C | 0.5 | 2.7E-06 | 2.4E-05 | 0.002 | 0.407 |
PTEN INT 3-4 | ss244244367 | G | 0.191 | 0.346 | A | 0.6 | 2.8E-07 | 2.5E-06 | 5.0E-04 | 0.416 |
STK11 INT 1-2 | rs22928814 | T | 0.241 | 0.362 | C | 0.6 | 1.1E-04 | 1.0E-03 | 0.031 | 0.476 |
BRIP1 EX 19b | ss244244329 | T | 0.538 | 0.386 | T | 1.9 | 9.9E-06 | 8.9E-05 | 0.006 | 0.521 |
ERBB2 INT 8-9 | ss244244349 | G | 0.089 | 0.027 | A | 3.2 | 0.001 | 5.8E-03 | 0.101 | 0.566 |
ESR1 INT 7-8a | ss244244344 | A | 0.124 | 0.223 | G | 0.5 | 2.3E-04 | 2.2E-03 | 0.051 | 0.708 |
BRIP1 INT 8-9a | ss244244325 | G | 0.135 | 0.011 | A | 14.5 | 3.2E-11 | 2.9E-10 | <1.0E-07 | 0.817 |
ERBB2 INT 1-2 | ss244244347 | T | 0.021 | 0.000 | C | _ e | 0.005 | 0.045 | 0.340 | 0.845 |
BRIP1 INT 15-16 | ss244244327 | T | 0.131 | 0.011 | A | 14.0 | 8.0E-11 | 7.2E-10 | <1.0E-07 | 0.874 |
ERBB2 EX13a | rs24616607 | G | 0.044 | 0.005 | C | 8.5 | 0.001 | 5.2E-03 | 0.095 | 0.983 |