Skip to main content

Table 2 Top 100 genes identified in Norwegian Landrace.

From: Gene expression profiles in liver of pigs with extreme high and low levels of androstenone

ID

Name

gene_id

FoldChange

adj.P.Val

206864

Similar to Alcohol dehydrogenase 6 (LOC523510)

XM_601810.2

-0.730

1.07e-13

204853

204853

 

-0.441

2.39e-13

209551

Isochorismatase domain containing 1 (ISOC1)

NM_016048.1

-0.403

3.28e-13

103021

Hydroxysteroid (17-beta) dehydrogenase 13 (HSD17B13)

NM_178135.2

-0.900

3.28e-13

204863

Hydroxysteroid (17-beta) dehydrogenase 13 (HSD17B13)

NM_178135.2

-0.730

3.78e-13

209525

Zinc finger protein 471 (ZNF471)

NM_020813.1

-0.335

1.69e-12

102789

102789

 

-0.364

1.69e-12

204725

204725

 

-0.367

1.69e-12

103376

Hydroxysteroid (17-beta) dehydrogenase 13 (HSD17B13)

NM_178135.2

-0.589

2.41e-12

205190

Similar to heterogeneous nuclear ribonucleoprotein C isoform b (LOC654074)

XM_945342.1

0.249

7.01e-12

204302

Aldehyde oxidase 1 (AOX1)

NM_001159.3

-0.481

9.60e-12

204466

204466

 

-0.345

1.20e-11

203752

203752

 

-0.274

1.52e-11

206901

Non-histone protein HMG1 (LOC445521)

NM_001004034.1

-0.286

5.34e-11

218781

KIAA1344 (KIAA1344)

NM_020784.1

0.280

5.34e-11

216031

Insulin-like-growth factor 2 (IGF2)

NM_213883.1

-0.847

5.34e-11

213651

213651

 

-0.437

9.01e-11

215880

Transcription elongation factor B (SIII). polypeptide 3 (110 kDa. elongin A) (TCEB3)

NM_003198.1

-0.797

9.45e-11

204619

Cytochrome b-5 (CYB5)

NM_001001770.1

-0.458

9.45e-11

204520

204520

 

-0.290

1.45e-10

103177

Cytochrome b-5 (CYB5)

NM_001001770.1

-0.489

2.06e-10

102774

Non-histone protein HMG1 (LOC445521)

NM_001004034.1

-0.302

3.48e-10

204081

204081

 

-0.251

3.48e-10

100528

ATP synthase. H+ transporting. mitochondrial F0 complex. subunit F6 (ATP5J)

NM_001003703.1

0.250

3.55e-10

211561

KIAA0427 (KIAA0427)

NM_014772.1

0.263

4.63e-10

209674

209674

 

0.269

7.12e-10

208386

Dual specificity phosphatase 12 (DUSP12)

NM_007240.1

-0.318

7.12e-10

207228

Small nuclear ribonucleoprotein polypeptide E (SNRPE)

NM_003094.2

0.252

7.37e-10

219297

Purine-rich element binding protein A (PURA)

NM_005859.3

0.499

8.70e-10

218205

SMC1 structural maintenance of chromosomes 1-like 1 (yeast) (SMC1L1)

NM_006306.2

0.300

1.11e-09

103194

Alpha-1 acid glycoprotein (AGP)

XM_585370.2

-1.071

1.16e-09

219538

219538

 

0.352

1.67e-09

201622

Hypothetical protein LOC285016 (LOC285016)

NM_001002919.1

-0.417

1.99e-09

217117

Amyloid beta (A4) precursor protein-binding. family B. member 3 (APBB3)

NM_006051.2

0.294

2.38e-09

102677

4-aminobutyrate aminotransferase (ABAT)

NM_000663.2

0.288

2.38e-09

216026

216026

 

-0.840

2.51e-09

216643

Leupaxin (Lpxn)

NM_134152.1

0.271

2.93e-09

205721

205721

 

-0.256

3.02e-09

202919

202919

 

0.272

3.02e-09

220257

Similar to 60S ribosomal protein L39 (LOC651724)

XM_940942.1

0.273

3.10e-09

103136

Mitochondrial translational initiation factor 2 (MTIF2)

NM_001005369.1

-0.250

3.35e-09

201942

201942

 

-0.286

4.06e-09

216638

216638

 

0.304

4.06e-09

204605

Similar to Maltase-glucoamylase, intestinal (LOC642103)

XM_936233.1

-0.234

4.12e-09

208567

208567

 

-0.307

4.71e-09

103361

Phenylalanine hydroxylase (PAH)

NM_000277.1

-0.627

5.15e-09

202659

FKBP1A-like (LOC654323)

NM_001038000.1

-0.312

5.49e-09

207982

La ribonucleoprotein domain family. member 4 (LARP4)

NM_052879.3

-0.247

5.63e-09

204513

Deoxyribonuclease II (DNASE2)

NM_214196.1

-0.255

5.73e-09

206370

Syndecan binding protein (syntenin) (SDCBP)

NM_001007068.1

-0.208

6.33e-09

214304

Heat shock transcription factor 1 (HSF1)

NM_005526.1

0.331

7.28e-09

103062

FKBP1A-like (LOC654323)

NM_001038000.1

-1.046

7.37e-09

200969

Family with sequence similarity 70. member A (FAM70A)

NM_017938.2

0.424

7.37e-09

206063

Chromosome 14 open reading frame 43 (C14orf43)

NM_194278.2

-0.230

8.05e-09

206129

206129

 

-0.447

1.10e-08

206577

Leukemia inhibitory factor receptor (LIFR)

NM_002310.3

-0.265

1.39e-08

103378

Similar to Putative steroid dehydrogenase KIK-I (LOC508455)

XM_585231.2

-0.314

1.49e-08

204838

FKBP1A-like (LOC654323)

NM_001038000.1

-0.309

1.49e-08

104413

Pyruvate carboxylase (PC)

NM_214349.1

0.246

1.49e-08

219405

Coiled-coil domain containing 42 (CCDC42)

NM_144681.1

0.447

1.49e-08

209512

209512

 

-0.310

1.72e-09

221025

221025

 

0.446

1.74e-08

200362

Chromosome 3 open reading frame 43, transcript variant 1 (C3orf43)

XM_173087.5

-0.199

1.88e-08

206386

206386

 

-0.262

2.65e-08

211845

Alanyl-tRNA synthetase domain containing 1 (AARSD1)

NM_025267.2

0.250

3.31e-08

208761

Ring finger protein 148 (RNF148)

NM_198085.1

-0.189

3.31e-08

209449

Similar to Zinc finger CCCH-type domain containing protein 11A transcript variant 3 (LOC441155)

XM_930970.1

-0.237

3.31e-08

205142

Bone morphogenetic protein receptor, type IA (BMPR1A)

NM_004329.2

-0.340

3.31e-08

203722

203722

 

-0.217

3.32e-08

103279

Orosomucoid 1 (ORM1)

NM_000607.1

-0.999

3.32e-08

101898

Bifunctional apoptosis regulator (BFAR)

NM_016561.1

-0.189

3.32e-08

104972

Cyclin-dependent kinase inhibitor 3 (CDKN3)

NM_214320.1

0.364

3.45e-08

202997

202997

 

-0.270

3.45e-08

102991

Cytochrome P450. family 2. subfamily E. polypeptide 1 (CYP2E1)

NM_214421.1

-1.079

3.68e-08

208187

Early growth response 3 (EGR3)

NM_004430.2

0.378

3.77e-08

205347

Histone H3.3A (H3F3A)

NM_213930.1

-0.237

3.77e-08

203762

Zinc finger protein 7 (KOX 4. clone HF.16) (ZNF7)

NM_003416.1

-0.234

4.37e-08

102955

L-kynurenine 3-monooxygenase Fpk (KMO)

NM_214076.1

-0.294

4.81e-08

212532

TBC1 domain family. member 10B (TBC1D10B)

NM_015527.2

0.231

4.99e-08

206466

Similar to glycosyltransferase-like domain containing 1 isoform a (LOC534677)

XM_871633.1

-0.299

5.15e-08

104900

Cullin 4A (CUL4A). transcript variant 1

NM_001008895.1

0.349

5.59e-08

208650

FKBP1A-like (LOC654323)

NM_001038000.1

-0.214

5.83e-08

205233

5'-3' exoribonuclease 2 (XRN2)

NM_012255.3

0.217

5.99e-08

102672

Cytochrome b-5 (CYB5)

NM_001001770.1

-0.528

6.21e-08

101034

Programmed cell death 6 interacting protein (PDCD6IP)

NM_013374.3

-0.247

6.21e-08

206253

Cyclin-dependent kinase 6 (CDK6)

NM_001259.5

-0.260

6.21e-08

209516

209516

 

-0.208

6.21e-08

100909

Myeloid-associated differentiation marker (MYADM)

NM_001020819.1

-0.239

7.42e-08

205225

Family with sequence similarity 80, member B (FAM80B)

NM_020734.1

0.247

7.42e-08

200683

200683

 

-0.302

7.64e-08

208724

Dickkopf-like 1 (soggy) (DKKL1)

NM_014419.3

0.275

7.64e-08

218253

Mesoderm induction early response 1, family member 2 (MIER2)

NM_017550.1

0.265

7.97e-08

209231

Heparin binding protein (HBP15/L22)

NM_213987.1

-0.343

8.00e-08

104000

Ribosomal protein L39 (RPL39)

NM_001000.2

0.264

8.37e-08

205725

205725

 

-0.208

8.73e-08

102726

Complement factor I (CFI)

NM_000204.1

-0.380

8.77e-08

100609

Proline rich 13 (PRR13)

NM_001005355.1

0.267

9.03e-08

104957

Succinyl-CoA:alpha-ketoacid coenzyme A transferase (OXCT)

NM_213938.1

0.392

9.03e-08

216727

216727

 

-0.287

9.12e-08

200320

Ubiquitin specific peptidase 32 (USP32)

XM_939750.1

0.439

9.28e-08

  1. Gene expression profiles were identified in Limma using empirical Bayes moderated t-statistics. Fold change and statistical significance is shown (FDR-adjusted p-values). The clone names refer to hits to pig, human, mouse or bovine sequences. Some genes are represented by several different clones on the array and may therefore show up more than once in the table, while others have no hits to the abovementioned species.