Table 1 Genes associated with protein processing, nucleotide metabolism, and transcription that had increased expression in adipose tissue of SD- versus LD-housed cats
From: Effect of photoperiod on the feline adipose transcriptome as assessed by RNA sequencing
Functional classification | Gene name | Gene symbol | Fold change |
|---|---|---|---|
Protein processing | Â | Â | Â |
Protein processing | membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) | MPP6 | 1.79 |
Protein processing | A kinase (PRKA) anchor protein 6 | AKAP6 | 2.99 |
Protein processing | cadherin 15, type 1, M-cadherin (myotubule) | CDH15 | 2.46 |
Protein processing | DnaJ (Hsp40) homolog, subfamily C, member 12 | DNAJC12 | 3.25 |
Protein processing | karyopherin alpha 3 (importin alpha 4) | KPNA3 | 2.19 |
Protein processing | kelch-like 23 (Drosophila) | KLHL23 | 2.31 |
Protein processing | kelch-like 33 (Drosophila) | KLHL33 | 4.31 |
Protein processing | kelch-like 34 (Drosophila) | KLHL34 | 3.34 |
Protein processing | kelch-like 38 (Drosophila) | KLHL38 | 2.57 |
Protein processing | kelch repeat and BTB (POZ) domain containing 12 | KBTBD12 | 2.57 |
Protein processing | myotubularin related protein 7 | MTMR7 | 2.12 |
Protein processing | membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) | MPP7 | 2.45 |
Protein processing | myosin light chain kinase family, member 4 | MYLK4 | 4.05 |
Protein processing | protein kinase C, theta | PRKCQ | 3.48 |
Protein processing | SRSF protein kinase 3 | SRPK3 | 2.81 |
Protein processing | synemin, intermediate filament protein | SYNM | 3.37 |
Protein processing | triadin | TRDN | 4.41 |
Protein ubiquitination | LIM domain 7 | LMO7 | 3.73 |
Protein ubiquitination | tripartite motif containing 55 | TRIM55 | 5.17 |
Protein ubiquitination | ubiquitin protein ligase E3 component n-recognin 3 (putative) | UBR3 | 1.87 |
Protein ubiquitination | WW domain containing E3 ubiquitin protein ligase 1 | WWP1 | 2.00 |
Ubiquitin cycle | cullin 3 | CUL3 | 1.70 |
Ubiquitin cycle | ubiquitin specific peptidase 28 | USP28 | 2.90 |
Nucleotide metabolism | Â | Â | Â |
Nucleotide binding | cAMP-regulated phosphoprotein, 21Â kDa | ARPP21 | 3.28 |
Nucleotide binding | DnaJ (Hsp40) homolog, subfamily C, member 21 | DNAJC21 | 1.93 |
Nucleotide binding | RNA binding motif protein 24 | RBM24 | 3.50 |
Nucleotide binding | Ras-related GTP binding D | RRAGD | 3.02 |
Nucleotide binding | zinc finger CCHC-type and RNA binding motif 1 | ZCRB1 | 1.53 |
Nucleotide metabolism | adenosine monophosphate deaminase 1 | AMPD1 | 4.31 |
Nucleotide metabolism | nudix (nucleoside diphosphate linked moiety X)-type motif 4 | NUDT4 | 1.85 |
Nucleotide metabolism | 5′-nucleotidase, cytosolic IA | NT5C1A | 3.22 |
Transcription | Â | Â | Â |
Transcription | eyes absent homolog 1 (Drosophila) | EYA1 | 3.62 |
Transcription | eyes absent homolog 4 (Drosophila) | EYA4 | 4.10 |
Transcription | DDB1 and CUL4 associated factor 6 | DCAF6 | 2.34 |
Transcription | homeobox A10 | HOXA10 | 2.89 |
Transcription | MTERF domain containing 3 | MTERFD3 | 1.67 |
Transcription | muscle-related coiled-coil protein | MURC | 5.53 |
Transcription | RNA binding protein, fox-1 homolog (C. elegans) 1 | RBFOX1 | 3.99 |