Table 1 Background data for the thirty-one M. bovis strains analyzed in this study
Sample ID | Herd of origin | Date | Sample type | GenBank accession numbers | Copy numbers of tandem repeats | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
fusA | gyrB | lepA | rpoB | TR14 | TR29 | TR30 | TR31 | TR35 | TR40-41 | TR49-51 | TR52 | TR59 | ||||
PG45 | Connecticut | 1961 | Lung | JQ031392 | JQ031411 | JQ031435 | JQ031493 | 2.2 | 4.8 | 2.3 | 5.8 | 4.0 | 4.0 | 2.2 | 4.0 | 2.4 |
MYC2 | Püspökhatvan | 2011 | Lung | KF926436 | KF926437 | KF926438 | KF926439 | - | - | 3.3 | - | 3.0 | - | 1.2 | - | - |
MYC22 | Sümeg | 2012 | Lung | KF926440 | KF926441 | KF926442 | KF926443 | - | 0.8 | 3.3 | - | 3.0 | 8.0 | 1.2 | 3.0 | 2.4 |
MYC30 | Bugyi | 2012 | Lung | KJ438237 | KJ438174 | KJ438195 | KJ438216 | - | 0.8 | 2.3 | 5.8 | 3.0 | 8.0 | 1.2 | 3.0 | 2.4 |
MYC42 | Nemti | 2012 | Lung | KJ438238 | KJ438175 | KJ438196 | KJ438217 | - | 12.8 | 3.3 | 5.8 | 3.0 | 8.0 | 1.2 | 4.0 | 2.4 |
MYC43 | Zsana | 2012 | Lung | KF926444 | KF926445 | KF926446 | KF926447 | - | 2.8 | 3.3 | - | 3.0 | 11.0 | 1.2 | 3.0 | 2.4 |
MYC44 | Győrszentiván | 2012 | Lung | KJ438239 | KJ438176 | KJ438197 | KJ438218 | - | 2.8 | 3.3 | - | 3.0 | - | 0.6 | 3.0 | 1.4 |
MYC45 | Budapest | 2012 | Lung | KJ438240 | KJ438177 | KJ438198 | KJ438219 | - | 2.8 | 3.3 | - | 3.0 | 11.0 | 0.6 | 3.0 | 1.4 |
MYC46 | Budapest | 2012 | Lung | KF926448 | KF926449 | KF926450 | KF926451 | - | 2.8 | 3.3 | - | 3.0 | 11.0 | 0.6 | 3.0 | 1.4 |
MYC47 | Dabas | 2012 | Lung | KJ438241 | KJ438178 | KJ438199 | KJ438220 | - | 2.8 | 3.3 | - | 3.0 | 11.0 | 1.2 | 3.0 | - |
MYC48 | Ősi | 2012 | Nasal swab | KJ438242 | KJ438179 | KJ438200 | KJ438221 | - | - | 3.3 | - | 3.0 | - | 1.2 | - | - |
MYC49 | Ősi | 2012 | Nasal swab | KF926452 | KF926453 | KF926454 | KF926455 | - | 12.8 | 3.3 | - | 3.0 | 8.0 | 1.2 | 4.0 | 2.4 |
MYC50 | Ősi | 2012 | Lung | KJ438243 | KJ438180 | KJ438201 | KJ438222 | - | 12.8 | 3.3 | - | 3.0 | 8.0 | 1.2 | 4.0 | - |
MYC51 | Ősi | 2012 | Nasal swab | KJ438244 | KJ438181 | KJ438202 | KJ438223 | - | 12.8 | 3.3 | - | 3.0 | 8.0 | 1.2 | 4.0 | 2.4 |
MYC52 | Solt | 2012 | Lung | KJ438245 | KJ438182 | KJ438203 | KJ438224 | 2.2 | 4.8 | 2.3 | 7.8 | 4.0 | 4.0 | 2.2 | 4.0 | 2.4 |
MYC53 | Solt | 2012 | Lung | KF926456 | KF926457 | KF926458 | KF926459 | 2.2 | 4.8 | 2.3 | 7.8 | 4.0 | 4.0 | 2.2 | 4.0 | 2.4 |
MYC65 | Csengersima | 2012 | Nasal swab | KJ438246 | KJ438183 | KJ438204 | KJ438225 | - | 1.8 | 3.3 | 5.8 | 3.0 | 8.0 | 1.2 | 4.0 | 2.4 |
MYC66 | Csengersima | 2012 | Nasal swab | KJ438247 | KJ438184 | KJ438205 | KJ438226 | - | - | 3.3 | 5.8 | 3.0 | 8.0 | 1.2 | 6.0 | 2.4 |
MYC67 | Csengersima | 2012 | Lung | KF926460 | KF926461 | KF926462 | KF926463 | - | - | 3.3 | 5.8 | 3.0 | 8.0 | 1.2 | 6.0 | 2.4 |
MYC68 | Csengersima | 2012 | Lung | KJ438248 | KJ438185 | KJ438206 | KJ438227 | - | - | 3.3 | 5.8 | 3.0 | 8.0 | 1.2 | 6.0 | 2.4 |
MYC69 | Komárom | 2013 | Nasal swab | KJ438249 | KJ438186 | KJ438207 | KJ438228 | - | 1.8 | 3.3 | - | 3.0 | 8.0 | 1.2 | 4.0 | - |
MYC70 | Komárom | 2013 | Nasal swab | KJ438250 | KJ438187 | KJ438208 | KJ438229 | - | 1.8 | 3.3 | 4.8 | 3.0 | 8.0 | 1.2 | 4.0 | - |
MYC71 | Komárom | 2013 | Nasal swab | KJ438251 | KJ438188 | KJ438209 | KJ438230 | - | 1.8 | 3.3 | - | 3.0 | 8.0 | 1.2 | 4.0 | - |
MYC72 | Komárom | 2013 | Nasal swab | KJ438252 | KJ438189 | KJ438210 | KJ438231 | - | 1.8 | 3.3 | 4.8 | 3.0 | 8.0 | 1.2 | 4.0 | - |
MYC73 | Komárom | 2013 | Nasal swab | KJ438253 | KJ438190 | KJ438211 | KJ438232 | - | 1.8 | 3.3 | 4.8 | 3.0 | 8.0 | 1.2 | 4.0 | - |
MYC74 | Komárom | 2013 | Nasal swab | KF926464 | KF926465 | KF926466 | KF926467 | - | 1.8 | 3.3 | 4.8 | - | 8.0 | 1.2 | 4.0 | - |
MYC75 | Komárom | 2013 | Nasal swab | KJ438254 | KJ438191 | KJ438212 | KJ438233 | - | 1.8 | 3.3 | - | 3.0 | 8.0 | 1.2 | 4.0 | - |
MYC76 | Komárom | 2013 | Nasal swab | KJ438255 | KJ438192 | KJ438213 | KJ438234 | - | 1.8 | 3.3 | 4.8 | - | 8.0 | 1.2 | 4.0 | - |
MYC77 | Kertészsziget | 2010 | Lung | KJ438256 | KJ438193 | KJ438214 | KJ438235 | 2.2 | 0.8 | 3.3 | - | 3.0 | 11.0 | 0.6 | 3.0 | 2.4 |
MYC78 | Hosszúpályi | 2011 | Lung | KF926468 | KF926469 | KF926470 | KF926471 | - | 0.8 | 3.3 | 5.8 | 3.0 | 8.0 | 1.2 | 4.0 | 2.4 |
MYC79 | Hosszúpályi | 2011 | Lung | KJ438257 | KJ438194 | KJ438215 | KJ438236 | - | 0.8 | 3.3 | 5.8 | 3.0 | 8.0 | 1.2 | 4.0 | 2.4 |
MYC80 | Ebes | 2011 | Lymphnode | KF926472 | KF926473 | KF926474 | KF926475 | 2.2 | 0.8 | 3.3 | - | - | 25.0 | 1.2 | 4.0 | 2.4 |